97 and later heater core replacement

Old 10-19-2015, 09:28 PM
CF Veteran
Thread Starter
investinwaffles's Avatar
Join Date: Oct 2013
Location: Tarpon Springs, FL / Denver, CO
Posts: 2,085
Year: '98
Engine: 4.0 I6
Smile 97 and later heater core replacement

Hi folks,
I just got done with an R&R on my heater core this weekend. I figured I would post up some insights to help others out during the install. This is not a how-to guide, but mostly meant to complement the usual how-to's (I used this How-To, although the image links are all dead.

Firstly, its really not that hard to do. There are a few items on the list that are a bit of a pain, but nothing that really approaches rocket science or quantum mechanics.

Start in the engine bay -- that is going to be the part that you have the biggest challenges IMO. Get everything disconnected first, because if you tear the interior out and realize that you cant disconnect your AC lines, you are going to be in a foul mood.
I used air to blow out the heater core to get as much coolant out as I could. I then stuffed paper towels and ziptied plastic bags around the outlets. The smell of coolant gives me a headache after living with a leaking heater core for so long so I wanted to minimize ANY spillage inside the cab.


Make sure you have all the parts you need before hand. This should be a no-brainer, but due to the location of the HVAC box, its a really good idea to replace your evaporator core if it is not performing well or if your AC has never worked like mine. The one I pulled out was pretty gross so I am glad that I went ahead and purchased the a/c evap core before pulling everything apart. Worst case you can just return it if yours is in great shape. Ditto for the blend door.


Make sure you purchase good quality replacement parts. I initially replaced mine with a Spectra branded aluminum unit, thinking it might be just as good as the copper original one. Dead wrong, it was about 1/2 as thick as the OEM copper unit and during 5* weather, the exit temperature from the vents was probably only 80*F, really not enough in 30kt crosswinds in the mountains. It was pretty miserable last winter.
The new unit I purchased from Orileys, which is a Murray branded unit, Part number [BOX IS IN THE GARAGE, GIVE ME A SEC]. I believe it is all brass, cost was $65, and it is of similar quality to my OEM unit that was leaking really badly.

The heat output is absolutely fantastic. Firstly, the 4.0 L6 has no problems staying warm even in sub zero temperatures (in my experience). The issue stems from low heater core flow due to blockage/deposits, or a malfunctioning thermostat that is allowing the coolant to circulate through the radiator. If the thermostat is closed, coolant constantly flows from the engine block, through the heater-core, and back into the engine block. Never touches the radiator unless the thermostat reaches pressure and opens, so blocking the radiator is not as effective as people think it will be.


Once you get everything unhooked in the engine bay, move to the interior. Start by pulling the center console and radio bezel out. It makes working in the cab much easier.

Secondly, I did not pull my seats. Instead, I went ahead and tore the dash down, removed all of the bolts securing the dash to the body, and then I dropped the steering column. It might have been my "gangster lean" broken seat bracket that enabled the steering column to swing down low enough, but all I needed to do was (if you have tilt steering), put the steering column in its lowest position, and remove the nuts securing the column to the dash. These are the nuts that run vertically (pointing straight up), not the ones further inwards that run towards the engine bay.

Once you drop the steering column, dont touch the tilt lever!! It is spring actuated so it will snap back to the upmost position and a pain in the *** to get back in position if you move it. Set it to its lowest setting and then consciously avoid touching it until AFTER you bolt it back in place.


Once you have the dash completely disconnected and are ready to rotate it out of the way, go to the passenger side and from the middle, pull the dash slightly upwards while pulling rearward. You need to clear the center two mounting studs on the firewall. If you have done everything properly, the dash should kind of pivot out of place. See the pic at the end of this post and you can see how I simply rotated it out of the way, and had more than enough room to remove the HVAC box.


Once you have the HVAC box out, crack the case open carefully and try and quickly study how it goes back together. The blend door was the trickiest part for me, it has a notch in the top of the housing that it absolutely MUST seat into, otherwise it will flop around and do pretty much nothing.
R&R the heater core and evap core if you so choose. Now is a good time to replace the blend door if you suspect the bottom shaft is cracked. Clean everything thoroughly while you are in there, especially if your heater core was leaking.

A word of warning for 97-01 XJ owners, the blend doors are completely different from 99-01, than 97-98. I am unsure if the pre 99 blend doors are the same as previous models, but the bottom shaft is a different design because of the electric motor on the 99+ models.

I opted to remove mine (there is a small torx/hex screw on the blend door arm on the bottom exterior of the HVAC box), and clean everything thoroughly. Afterwards, I greased the CRAP out of the bottom assembly using Lucas Green Xtra HD grease, and packed the upper receiver housing of the blend door shaft so there was less friction. I also lubed the
rubber edge of the blend door so it would slide easier. Luckily mine was in good shape so I re-used it.

I did have a hard time getting the HVAC box back together. The blend door shaft wouldn't seat inside the upper part of the housing so I ended up unscrewing the bottom mounting thingy (rotating assembly), and used the suction of the grease to keep the blend door in place. I then screwed the bottom rotating piece in place from the bottom, and proceeded to screw the rest of the housing back together.

I also used some nice 3M memory foam style window foam to seal the edges of the heater core and evap core, which I think will really help with efficiency of the HVAC system. Before mounting the blower fan back in place, I cleaned it out using electrical contact cleaner and tried to grease everything as best as I could.


I used the same foam around ALL mounting areas that i could find. I cut it in half, thickness wise, so it would not create any gaps but prevent rattling and stuff. This made a HUUUUGEEEE difference in my Jeep! I highly recommend doing the same.
Obviously don't go too thick and make sure the foam is compressing properly so there aren't any gaps or too much pressure on the ****ty nutserts that Jeep loves to use.


Check for proper operation as best as you can after reinstalling the HVAC box. Make sure the blend door is operating smoothly, and make sure that the HVAC box is sealing properly against the firewall. Mine was NOT seating properly against the blower housing, so I pulled it out, put some foam around the seal for safety sake (mounted lightly inboard, as kind of a "secondary" seal inside the cabin) and mounted it back up.

I tightned the nuts in the engine bay starting from the middle two, then the one around the blower motor, then the ones behind the engine last. My truck was leaking around the blower motor before, so I wanted more tension on that area. There aren't any seals that I could see on the area closer to the engine bay, so it was less of a concern for me.


Replace the AC drier since you have the opportunity. Fill the coolant reservoir up to the high mark and keep an eye on it, as the system bleeds. It should bleed fairly quickly, but I ran my Jeep up to temp with the radiator cap off, and the nose pointing up-hill to try and bleed it as best as I could.

You will be absolutely astonished at how fast it warms up in normal, 60* weather if you spent winter with no heat like I did.


If your heater core is leaking and you live in a northern climate, DO THIS BEFORE IT GETS COLD!! It sucks working in the cold, and if the core starts leaking really bad you may not be able to use your heat at all, as the antifreeze vapor makes it impossible to see anything (thick slimy film that just smears around on the inside of the windscreen). Really dangerous when you are on the highway and have to keep wiping a small hole in your windscreen to see where you are going. Kind of feels like I am driving a submarine

Other than that, if anyone has any questions, drop a response and I will see if I can assist!

Sorry for the long post, I figure I would share as much as I could because even for a seasoned mechanic, this is a pretty daunting task.

Pics of the ordeal;

Name:  20151017_210406.jpg
Views: 3822
Size:  7.0 KB

Dash swung up and out of the way, secured with bungees to the passenger grab handle.

Name:  download_20151017_220348.jpeg
Views: 6002
Size:  249.1 KB

Spectra vs. Murray heater core;

Name:  20151017_174734.jpg
Views: 4493
Size:  978.9 KB

Name:  20151017_174719.jpg
Views: 4041
Size:  341.4 KB

Out with the old!

Name:  20151017_174624.jpg
Views: 4849
Size:  843.5 KB

In with the new!
Name:  20151017_174646.jpg
Views: 3860
Size:  7.0 KB
investinwaffles is offline  
Old 10-20-2015, 07:40 AM
Senior Member
Join Date: Mar 2014
Location: Eastern Long Island, NY
Posts: 664
Year: 1996
Model: Cherokee
Engine: I6 Cyl / 4L

Great pictures, nice write up. Thank you very much. I know I will use this one day too.
OldTires is offline  
Old 11-29-2015, 02:42 PM
athenscj5's Avatar
Join Date: Nov 2008
Location: Colorado Springs, CO
Posts: 216
Year: 1998
Model: Cherokee
Engine: 4.0HO

Do you have the part numbers for the pieces you used? I definitely see the difference in the heater cores and would rather have the copper/brass vs the aluminum.
athenscj5 is offline  
Old 11-29-2015, 04:45 PM
CF Veteran
Join Date: May 2012
Location: Lost in the wilds of Virginia
Posts: 4,527
Year: 1998 Classic (I'll get it running soon....) and 96 (just purchased) and 02 Grand
Model: Cherokee (XJ)
Engine: 4.0

Great write up! Should be a sticky!
BlueRidgeMark is offline  
Old 12-02-2015, 11:29 AM
CF Veteran
WyoCherokee's Avatar
Join Date: Jan 2015
Location: Gillette Wyoming
Posts: 1,296
Year: 1990
Model: Comanche (MJ)
Engine: 4.0

how did you Evac your AC system? did you have a shop do it and then just drive it home? or did you evac it home? I need to do this to mine.
WyoCherokee is offline  
Old 12-04-2015, 12:49 PM
CF Veteran
Thread Starter
investinwaffles's Avatar
Join Date: Oct 2013
Location: Tarpon Springs, FL / Denver, CO
Posts: 2,085
Year: '98
Engine: 4.0 I6

Originally Posted by WyoCherokee View Post
how did you Evac your AC system? did you have a shop do it and then just drive it home? or did you evac it home? I need to do this to mine.
My A/C has never worked, and there was no line pressure when I bought the car.
I would have it evac'd at a reputable shop, please do not vent that crap straight into the atmosphere, whatever you do!!
investinwaffles is offline  
Old 12-20-2015, 01:42 PM
Join Date: Dec 2015
Location: genesee, mi
Posts: 9
Year: 2000
Model: Cherokee
Engine: 4.o i-6

I'm new to the jeep community, my core is clogged, looks like red clay almost, the jeep sat for a year, tried running water through it but was so clogged the water shot back out. no sign of a leak ( i checked floor board and listen to the hvac for leaks etc) im going to try the CLR gravity to the return outlet line and let it sit then and see if that will loosen the debris then see if i can run water through the line than air, is that a good start? also i am having problems with the hatch latch, wont open from outside, i adjusted the threaded part that seats in a plastic piece. still wont open from outside, any ideas ? ( i have lubricated all mechanical mechanisms in the latch area. )
and finally i have tail light issues, the blinkers work but no rear running lights when i turn them on. any ideas? i checked the bulbs and all are good, possible fuse or what else could cause the issue?

Last edited by chris-topher; 12-20-2015 at 01:43 PM. Reason: missed key word
chris-topher is offline  
Old 01-09-2016, 12:28 PM
Junior Member
JeepJeepin's Avatar
Join Date: Feb 2015
Location: land of eh
Posts: 55
Year: 2000
Model: Cherokee
Engine: i6

Did you just check the bulbs or put new ones in? I'd try and adjust the latch more
JeepJeepin is offline  
Related Topics
Thread Starter
Last Post
Stock XJ Cherokee Tech. All XJ Non-modified/stock questions go here
12-31-2015 08:21 PM
Stock XJ Cherokee Tech. All XJ Non-modified/stock questions go here
11-19-2015 09:49 PM
Stock XJ Cherokee Tech. All XJ Non-modified/stock questions go here
11-12-2015 06:12 PM

Currently Active Users Viewing This Thread: 1 (0 members and 1 guests)

Thread Tools
Search this Thread
Quick Reply: 97 and later heater core replacement

Contact Us - Archive - Advertising - Cookie Policy - Privacy Statement - Terms of Service

© 2019 MH Sub I, LLC dba Internet Brands

We are a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for us to earn fees by linking to Amazon.com and affiliated sites.